{"id":109,"date":"2014-04-25T14:08:06","date_gmt":"2014-04-25T14:08:06","guid":{"rendered":"http:\/\/sophocles.eu\/?page_id=109"},"modified":"2016-02-29T16:11:34","modified_gmt":"2016-02-29T16:11:34","slug":"publications","status":"publish","type":"page","link":"https:\/\/sophocles.eu\/?page_id=109","title":{"rendered":"Publications"},"content":{"rendered":"<h5><a href=\"http:\/\/www.mdpi.com\/journal\/entropy\/special_issues\/information-processing#editors\" target=\"_blank\">Special Issue &#8220;Information Processing in Complex Systems&#8221; in Journal Entropy.<\/a><\/h5>\n<p>Featuring 10 articles on the rapidly growing topic of studying complex systems using an information-theoretic viewpoint.<\/p>\n<p><strong>Guest editor Rick Quax:<\/strong><em> &#8220;All systems in nature have one thing in common: they process information. Information is registered in the state of a system and its elements, implicitly and invisibly. As elements interact, information is transferred and modified. Indeed, bits of information about the state of one element will travel\u2014imperfectly\u2014to the state of the other element, forming its new state. This storage, transfer, and modification of information, possibly between levels of a multi level system, is imperfect due to randomness or noise. From this viewpoint, a system can be formalized as a collection of bits that is organized according to its rules of dynamics and its topology of interactions. Mapping out exactly how these bits of information percolate through the system could reveal new fundamental insights in how the parts orchestrate to produce the properties of the system. A theory of information processing would be capable of defining a set of universal properties of dynamical multi level complex systems, which describe and compare the dynamics of diverse complex systems ranging from social interaction to brain networks, from financial markets to biomedicine. Each possible combination of rules of dynamics and topology of interactions, with disparate semantics, would reduce to a single language of information processing.&#8221;<\/em><\/p>\n<h5><strong>Published articles<\/strong><\/h5>\n<ul>\n<li>Har Shemesh, O., Quax, R., Mi\u00f1ano, B., Hoekstra, A.G., Sloot, P.M.A. (2016)\u00a0Non-parametric estimation of Fisher information from real data. In:\u00a0<em>Physical Review E- Rapid Communications. <\/em>Vol.\u00a093, 023301<em>.\u00a0<\/em>Available at:\u00a0<a href=\"http:\/\/journals.aps.org\/pre\/abstract\/10.1103\/PhysRevE.93.023301\" target=\"_blank\">http:\/\/journals.aps.org\/pre\/abstract\/10.1103\/PhysRevE.93.023301<\/a>.<\/li>\n<li>Arbona, A., Bona, C., Mass\u00f3, J., Mi\u00f1ano, B. and A. Plastino (2016) Complexity and Fisher metric tensor in emergent dynamics of spatial systems. In: Physica A: Statistical Mechanics and its applications.\u00a0Vol. 448,\u00a0216-223. Available at:\u00a0<a href=\"http:\/\/dx.doi.org\/10.1016\/j.physa.2015.12.093\" target=\"_blank\">http:\/\/dx.doi.org\/10.1016\/j.physa.2015.12.093<\/a>.<\/li>\n<li>Chliamovitch, G., Malaspinas, O.\u00a0, Chopard, B. (2015) A Truncation Scheme for the BBGKY2 Equation.\u00a0<em>Entropy 17(11), 7522-7529<\/em>. Available at:\u00a0<a href=\"http:\/\/www.mdpi.com\/1099-4300\/17\/11\/7522\" target=\"_blank\">doi:10.3390\/e17117522<\/a><\/li>\n<li>Paluch, R., Suchecki, K., Ho\u0142yst, J.A. (2015) Models of random graph hierarchies. Vol. 88, 266.\u00a0<em>European Physical Journal B<\/em>.\u00a0Available at: <a href=\"http:\/\/epjb.epj.org\/articles\/epjb\/abs\/2015\/10\/contents\/contents.html\" target=\"_blank\">doi:10.1140\/epjb\/e2015-60249-4<\/a>.<\/li>\n<li>Chliamovitch, G., Dupuis, A., Chopard, B. (2015) Maximum entropy Rate Reconstruction of Markov Dynamics. <em>Entropy\u00a017(6)\u00a03738-3751<\/em>. Available at:\u00a0<a href=\"http:\/\/dx.doi.org\/10.3390\/e17063738\">doi:10.3390\/e17063738<\/a>.<\/li>\n<li>Paluch, R., Suchecki, K., Ho\u0142yst, J.A. (2015)\u00a0Hierarchical Cont-Bouchaud model.\u00a0<em>Acta Physica Polonica A.\u00a0Vol. 127 (3) A108-A112\u00a0. <\/em>Available at:<em>\u00a0<a href=\"http:\/\/yadda.icm.edu.pl\/przyrbwn\/element\/bwmeta1.element.bwnjournal-article-appv127n3a19kz\" target=\"_blank\">http:\/\/yadda.icm.edu.pl\/przyrbwn\/element\/bwmeta1.element.bwnjournal-article-appv127n3a19kz<\/a>.<\/em><\/li>\n<li>Golub, A., Chliamovitch, G., Dupuis, A., Chopard, B. (2015) Uncovering Discrete Non-Linear Dependence with Information Theory. <em>Entropy, 17(5), 2606-2623.<\/em> Available at: <a href=\"http:\/\/www.mdpi.com\/1099-4300\/17\/5\/2606\" target=\"_blank\">http:\/\/www.mdpi.com\/1099-4300\/17\/5\/2606<\/a> or doi:10.3390\/e17052606.<\/li>\n<li>Chliamovitch, G., Dupuis, A., Golub, A.,\u00a0Chopard, B.(2015) Improving predictability of time series using maximum entropy methods.\u00a0<em>Europhysics Letters. 101 (10003)<\/em><span style=\"font-weight: bold;\">.\u00a0<\/span>Available at:\u00a0<a href=\"http:\/\/iopscience.iop.org\/0295-5075\/110\/1\/10003\/article\">http:\/\/iopscience.iop.org\/0295-5075\/110\/1\/10003\/article<\/a>\u00a0or <a href=\"http:\/\/dx.doi.org\/10.1209\/0295-5075\/110\/10003\" target=\"_blank\">dx.doi.org\/10.1209\/0295-5075\/110\/10003<\/a>.<\/li>\n<li>Chliamovitch, G., Chopard, B., Dupuis, A. (2014) On the Dynamics of Multi-Information in Cellular Automata.\u00a0<em>Cellular Automata. Lecture Notes in Computer Science<\/em>\u00a0<strong>8751.\u00a0<\/strong>Available at:\u00a0<a href=\"http:\/\/link.springer.com\/chapter\/10.1007%2F978-3-319-11520-7_10\">http:\/\/link.springer.com\/chapter\/10.1007%2F978-3-319-11520-7_10<\/a>.\u00a0Presented at the <a href=\"http:\/\/www.acri2014.agh.edu.pl\/doku.php?id=start\">ACRI conference 2014<\/a>.<\/li>\n<li>Jung, T.I., Vogiatzian, F., Har-Shemesh, O., Fitzsimons, C.P. and R. Quax (2014)\u00a0Applying Information Theory to Neuronal Networks: From Theory to Experiments. <em>Entropy<\/em>. 16(11). Available at:\u00a0<a href=\"http:\/\/www.mdpi.com\/1099-4300\/16\/11\/5721\">http:\/\/www.mdpi.com\/1099-4300\/16\/11\/5721<\/a>.<\/li>\n<li>Czaplicka, A, Suchecki, K., Minano, B., Trias, M., Holyst, J.A. (2014) Information slows down hierarchy growth.\u00a0<em>Physical Review E <\/em><strong>89<\/strong>. Available at:\u00a0<a href=\"http:\/\/journals.aps.org\/pre\/abstract\/10.1103\/PhysRevE.89.062810\">http:\/\/journals.aps.org\/pre\/abstract\/10.1103\/PhysRevE.89.062810<\/a><\/li>\n<li>Duan, W., Quax, R., Lees, M., Qiu, X. and P.M.A. Sloot (2014)\u00a0Topology dependent epidemic spreading velocity in weighted networks.\u00a0<em>Journal of Statistical Mechanics: Theory and Experiment (JSTAT)<\/em>. Available at:\u00a0<a href=\"http:\/\/iopscience.iop.org\/1742-5468\/2014\/12\/P12020\">http:\/\/iopscience.iop.org\/1742-5468\/2014\/12\/P12020<\/a>.<\/li>\n<li>Quax, R. (2013)\u00a0The diminishing role of hubs in dynamical processes on complex networks.\u00a0<em>Journal of the Royal Society Interface,<\/em>\u00a0pp. 151 &#8211; 167. Available at:\u00a0<a href=\"http:\/\/rsif.royalsocietypublishing.org\/content\/10\/88\/20130568\">http:\/\/rsif.royalsocietypublishing.org\/content\/10\/88\/20130568<\/a><\/li>\n<li>A. Arbona, C. Bona, B. Mi\u00f1ano, A. Plastino (2013) Statistical complexity measures as telltale of relevant scales in emergent dynamics of spatial systems. <i>Physica A, 11\/2013\/410<\/i>. Available at: <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0378437114003690\" target=\"_blank\">http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0378437114003690<\/a><\/li>\n<\/ul>\n<h5><strong>Published thesis<\/strong><\/h5>\n<ul>\n<li>Borgdorff, J. Distributed Multiscale Computing. PhD Thesis 2014. [<a href=\"http:\/\/www.google.nl\/url?sa=t&amp;rct=j&amp;q=&amp;esrc=s&amp;source=web&amp;cd=3&amp;cad=rja&amp;uact=8&amp;ved=0CD0QFjAC&amp;url=http%3A%2F%2Fgss.uva.nl%2Fbinaries%2Fcontent%2Fassets%2Fuva%2Fen%2Fresearch%2Fphd%2Fsummaries%2F2014%2F07%2Fsummary-borgdorff.pdf%3F1403096428391&amp;ei=pBPyU7TMJ8zXPZq8gZgF&amp;usg=AFQjCNHBPKJUEv03Az0ltZqXcrgGlSz8wA&amp;sig2=jzPgirhwcZTB9K_zu0qicA&amp;bvm=bv.73231344,d.ZWU\">Summary<\/a>, <a href=\"http:\/\/dare.uva.nl\/record\/1\/418414\" target=\"_blank\">Full Thesis<\/a>]<\/li>\n<\/ul>\n<h5><strong>Accepted<\/strong><\/h5>\n<ul>\n<li>Golub, G. Chliamovitch, A. Dupuis, B. Chopard (accepted) Multiscale Representation of High-Frequency Marked Liquidity. Available at:\u00a0<a href=\"http:\/\/arxiv.org\/pdf\/1402.2198.pdf\">http:\/\/arxiv.org\/pdf\/1402.2198.pdf<\/a>.<\/li>\n<li>G\u00f3rski, P.J., Czaplicka, A., Ho\u0142yst, J.A. (accepted) Coevolution of Information Processing and Topology in Hierarchical Adaptive Random Boolean Networks.\u00a0To:\u00a0<em>European Physical Journal B<\/em>. Available at:\u00a0<a href=\"http:\/\/arxiv.org\/abs\/1502.03338\">http:\/\/arxiv.org\/abs\/1502.03338<\/a>.<\/li>\n<li>Har Shemesh, O., Quax, R., Hoekstra, A.G., Sloot, P.M.A. (accepted) Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. To: <em>JSTAT<\/em>. Available at:\u00a0<a href=\"http:\/\/arxiv.org\/abs\/1512.02077\" target=\"_blank\">http:\/\/arxiv.org\/abs\/1512.02077<\/a>.<\/li>\n<\/ul>\n<h5><strong>Submitted<\/strong><\/h5>\n<ul>\n<li>G. Siudem, J.A. Holyst (subm) Diffusion on weakly-coupled networks of networks with fitness factors. To: <i>Physical Review E<\/i>. Available at: <a href=\"http:\/\/arxiv.org\/abs\/1303.2650\">http:\/\/arxiv.org\/abs\/1303.2650<\/a>.<\/li>\n<li>Chliamovitch, G., Chopard, B. and L. Velasquez (subm)\u00a0Assessing complexity by means of maximum entropy models.\u00a0To:\u00a0<i>Physical Review E.\u00a0<\/i>Available at:\u00a0<a href=\"http:\/\/arxiv.org\/abs\/1408.0368\">http:\/\/arxiv.org\/abs\/1408.0368<\/a>.<\/li>\n<\/ul>\n<h5><strong>Under Preparation<\/strong><\/h5>\n<ul>\n<li>Czaplicka, A., Ho\u0142yst, J.A. (subm)\u00a0From equality to diversity &#8211; bottom-up approach for hierarchy growth.\u00a0\u00a0Available at:\u00a0<a href=\"http:\/\/arxiv.org\/abs\/1311.4460\">http:\/\/arxiv.org\/abs\/1311.4460<\/a>.<\/li>\n<\/ul>\n<h5><strong>Conference contributions<\/strong><\/h5>\n<p>2014<\/p>\n<p><a href=\"http:\/\/simsocsci.blogspot.nl\/2014\/04\/wednesday-morning-version-of-timetable.html\">Janusz Holyst: Information slows down hierarchy growth @ essa \u2013 Simulating the Social Processes of Science. Thursday, 10 April 2014.<\/a> <a href=\"fens.ptf.net.pl\/ckfinder\/userfiles\/files\/2014\/prezentacje\/Information_slows_down_hierarchy_growth.ppt\">View Presentation here.<\/a><\/p>\n<p>2013<\/p>\n<p><a href=\"http:\/\/knowescape.org\/knowescape2013\/program\/\">Janusz Holyst: Information slows down hierarchy growth @ First Annual KnowEscape Conference, November 2013.<\/a><\/p>\n<p>Conference Paper:<\/p>\n<p><a href=\"http:\/\/knowescape.org\/wp-content\/uploads\/2013\/11\/knowescape2013_submission_29.pdf\">A. Czaplicka; K. Suchecki; B. Minano; M. Trias and <strong>J.A. Holyst<\/strong>: Information slows down hierarchy growth; 7 October 2013.<\/a><\/p>\n<h5>Software<\/h5>\n<p><a href=\"http:\/\/qminer.ijs.si\/\">http:\/\/qminer.ijs.si\/<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Special Issue &#8220;Information Processing in Complex Systems&#8221; in Journal Entropy. Featuring 10 articles on the rapidly growing topic of studying complex systems using an information-theoretic viewpoint. Guest editor Rick Quax: &#8220;All systems in nature have one thing in common: they process information. Information is registered in the state of a system and its elements, implicitly &hellip; <a href=\"https:\/\/sophocles.eu\/?page_id=109\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Publications<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/pages\/109"}],"collection":[{"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/sophocles.eu\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=109"}],"version-history":[{"count":46,"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/pages\/109\/revisions"}],"predecessor-version":[{"id":294,"href":"https:\/\/sophocles.eu\/index.php?rest_route=\/wp\/v2\/pages\/109\/revisions\/294"}],"wp:attachment":[{"href":"https:\/\/sophocles.eu\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=109"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}